PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000434
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 487aa    MW: 54466 Da    PI: 7.2824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000434genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13336382455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  DCAR_000434 336 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 382
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-3750223IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.29E-14331382No hitNo description
PROSITE profilePS5088817.066332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-18334394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16336394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-15338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGEKFWLKED DKFFVEGILG TEAFKYLVCL ASNDVLSEFS TPAGYLGVEQ ELCKILEEYS  60
GWNYAIYWQV CSLKSGKSAL IWGDGQCSQT NVVLSGDTPF QGDEKKRVLE LLQSCFGKTR  120
NDTIVAPLES VSDMDMFYRA SMYFSYPFDK PSIPSQSFNS SRSIWVSDMK DTLEHYESRS  180
YLAKMARLET VIFVPLKSGV VEMGSTHSIP QDEVLINKVK SLFAKPHPTR AKLLPKIFGR  240
QISIGGGEPV ASTGIPPNIE KDLGFNSYSS KLQIGDSHGK QQHKPSEKKF FPQMIEGNFS  300
ILDSQISSSD SLLQVDENKP RKRGRKPVNG REEQLNHVEA ERQRREKLNQ RFYALRAVVP  360
NISKMDKASL LGDAISYITD LQSRIVFLES EKGTATDKKI QCIAPKIDLQ TTAEHTLVVR  420
VSCPLNSHPV SGIIKMLREN DFEIKDCSVS TSCETNNNEI AHTFSIQTHG GGAEHLKEKL  480
TAAFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27330392264Transcription factor MYC2
5gnj_B1e-27330392264Transcription factor MYC2
5gnj_E1e-27330392264Transcription factor MYC2
5gnj_F1e-27330392264Transcription factor MYC2
5gnj_G1e-27330392264Transcription factor MYC2
5gnj_I1e-27330392264Transcription factor MYC2
5gnj_M1e-27330392264Transcription factor MYC2
5gnj_N1e-27330392264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228270.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-168MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A175Y9460.0A0A175Y946_DAUCS; Uncharacterized protein
STRINGMigut.D00401.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-120bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]