PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000539
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1037aa    MW: 115153 Da    PI: 5.8742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000539genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19588684295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed   +++W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v++  ++ ++++++
  DCAR_000539 588 QKVLKQSDVGNLGRIVLPKKEAETHlpQLDERDGISIDMEDiGISKVWNLRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDmKNGKYL 682
                  79*************************999***********7777*******99777777777777.********************..555777777 PP

                  EE CS
           B3  94 vk 95 
                  ++
  DCAR_000539 683 IR 684
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-28584697IPR015300DNA-binding pseudobarrel domain
CDDcd100156.82E-32586686No hitNo description
SuperFamilySSF1019369.81E-22586682IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.715587689IPR003340B3 DNA binding domain
SMARTSM010195.7E-17587689IPR003340B3 DNA binding domain
PfamPF023622.2E-15588683IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MAREKGVEVH AENAIFCGGD AAMDDDVVDE IMGALSEAEI WLGGDEQDET PVADSSIFDN  60
SFPPLPDFPC MSSTSSSSST PALTTKQFVS SSASPASSSS SAASWAMIRS DADQRMKQDV  120
RSIQYDPATP VPDLSDGFRP SDGSTGMEDV DCMDVMNNFG YMDLIDIEDG NDLWDPSCIF  180
QSDDDQTYSR DQSIVSQDVR NREDENCYII EGGKEVKEKT GFDELGVMFF EWLKNNKEHI  240
SAEDMRNIKF KRATIECASK RLGSTQEGRK QLLKLILEWV EQHHLQNKRN QDAAAAAHQV  300
VPCQYQESFP NPNPNIQNTI PTMDANTFMW IPTQTYFNQA LVSPAASAPA VFPPPAMAYV  360
VGDLQQQPFV GGANASPMNC QAYSPQMPMP PTGYHLLQPA QSWPQSQFVS APQYNSFPDQ  420
NGTFAPITPQ PFAPVYGDQN PSQIYNGNNV EDPIRLGPSA TKEARKKRMA RQRRVSLHHY  480
RHHPHQNQLK KVDSSGQNEG RFNIETCTDN IDGVTSPLNC ILQPPAIESP ILEQPHKEAQ  540
PRQQECHTSD RTLLRAQSNQ QLTQTSERGQ QLQKQEFKGG NNFKLLLQKV LKQSDVGNLG  600
RIVLPKKEAE THLPQLDERD GISIDMEDIG ISKVWNLRYR FWPNNKSRMY LLENTGDFVR  660
TNGLQEGDFI VIYSDMKNGK YLIRGVKVRQ QPAKPKSEPK VKATRKNRNS GAGNGHSSTP  720
SKLKGNFKLI LMLDLLKVEK YVQKLNALTI YNLSGAYEHT ESLSVGINSS DGYSMSGLAA  780
LGRQLGAMGL KDEPRVDVNS AIAADLMGMY QSMGEALAHR QIKNVMLRTE LAQRTGVPEM  840
PPNVAINLNL MLLVLSGQSS MQGRQDYCCL GGRGLVLQLL PKMLTRSTLS AENIVATTVQ  900
SRPTVRVKDD SARPTLTLFN KEAKDLIGVQ VDRILRTSSV YQWIEYVLTE LSEDANLLNT  960
LPIFKNIVGK ECASDIKINA YNIDRGYEEY TAFRLSECAA ASHDPDEGKM GGKAAKKQKT  1020
DCLTSATMHR AYILDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-345846912109B3 domain-containing transcription factor FUS3
6j9b_D2e-345846912109B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219011.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLA0A166FK340.0A0A166FK34_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-111B3 family protein