PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000540
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 233aa    MW: 26299 Da    PI: 9.7908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000540genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14158204253
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                  r++hn  Er+RR++i + f++L++l+P+ +        s a+iL ++v YIks
  DCAR_000540 158 RETHNLSERNRRAKISQQFQKLQKLIPPgN------TASQASILDRTVTYIKS 204
                  89**************************66......79**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15157224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-12158210No hitNo description
Gene3DG3DSA:4.10.280.108.8E-15158223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLTKIWPHPI SKRVPTNMRF PPRKKRIKGV CNMDDERTQE ASRDIGKDLE LSPPQPQQKT  60
SSWWVPQFNR VELAPLPDPC LVSASTQQAD YLVDAPTKHM LSANTSLDPL SSGADCTRTD  120
NLKRKEKCEY PSPHEDSDGI CMEKKEESPS GKKLKIFRET HNLSERNRRA KISQQFQKLQ  180
KLIPPGNTAS QASILDRTVT YIKSVKGLLQ MLSTMSPENA EAIQQFYSSK FG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222654.11e-147PREDICTED: transcription factor PIF1-like
TrEMBLA0A166FK421e-172A0A166FK42_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-12phytochrome interacting factor 3-like 5