PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000544
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 182aa    MW: 20452 Da    PI: 4.904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000544genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08114162255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rr+ n  E++RR riN+ + +L+el+  +     +K+   +iL  A+  Ik Lq
  DCAR_000544 114 RRTPNFSEKKRRVRINEQLKNLQELVKLN-----GKVQQLSILDAAITEIKLLQ 162
                  888999********************888.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-12104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-8111166No hitNo description
Gene3DG3DSA:4.10.280.106.9E-10111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.081112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6114162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-4118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MYMNDCYRAD DRILELSPET AGRYLETSAP QLVDWGEIQH LDDSVFEPQQ DDLFLNHLHF  60
LTFVSAPTPT PVADLLISAA APTQQEEQLL FIKEVEYSRK GKGESNSSSA KKLRRTPNFS  120
EKKRRVRINE QLKNLQELVK LNGKVQQLSI LDAAITEIKL LQQEVQNAAP APSGNSDFPN  180
N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226404.11e-100PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A166FK671e-131A0A166FK67_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-10phytochrome interacting factor 3