PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000545

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 279aa MW: 30848.2 Da PI: 4.2791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000545	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	220	248	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 r+ hnerErrRRd+i +++++Lrel+P + DCAR_000545 220 REHHNERERRRRDKISDRIDQLRELVPGC 248 899************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-11	217	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.29	218	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-11	218	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	220	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-4	224	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MCGTQMRGKA SSYHFFRSLL QKHRFPDFRD EEIFIWIGFF TNDIYQVQGV AVATPPLQAE 60 NEVFVNEQYF ALPPLTNPTP GVVQDEADYN YWIGNMGTAD EQISRGAEAP LWEVETNHQF 120 HQAVTSPAAV PQAGDGLWAL ELPPLDDDLY PLIVSPADDF APVFTEPTSQ VAAPAPAFTA 180 AQATSVGAAV EANQEEAEAQ VEEEADADLG SSTQAMKSYR EHHNERERRR RDKISDRIDQ 240 LRELVPGCKK PSVYLITGIS QVEDGIQRIG ASASFQFK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	230	REHHNERERRRR
2	226	231	ERRRRD
3	227	232	RRRRDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243815.1	1e-146	PREDICTED: uncharacterized protein LOC108215757
TrEMBL	A0A161ZIW7	0.0	A0A161ZIW7_DAUCS; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	DCAR_000545