PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000701
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 287aa    MW: 33700.7 Da    PI: 9.4864
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000701genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.93.6e-2523104186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W +qe+++Li +r  +e++++  k++k lWe+vs km+ergf rsp qCk+kwenl  ryk  ++++++      ++cp+f++l+
  DCAR_000701  23 QWGQQETKDLIGIRAGLERDSKVLKRNKSLWEAVSGKMKERGFVRSPDQCKCKWENLVVRYKGKETSDINT----GRQCPFFEELH 104
                  7****************************************************************999984....668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761680IPR017877Myb-like domain
CDDcd122036.41E-212287No hitNo description
PfamPF138372.8E-2023105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSHTTPFSGG GDDFPRRDER VPQWGQQETK DLIGIRAGLE RDSKVLKRNK SLWEAVSGKM  60
KERGFVRSPD QCKCKWENLV VRYKGKETSD INTGRQCPFF EELHAFFTAR ANNAQLEPGA  120
GAAKKRVKRN SRDCSSEDLS VDEDEDENDE VRRSSNPRKK NVKREKQLSR SAQEKQSPRQ  180
LSAMNTGSNT TSNLTSIQDM LREFIQQQQR IDMEWRESIE KRAYERLLFE QEWRQSMEKL  240
ERERILIEQT WREKEEQRRM RDESRAEKRD ALLTALLNKL IQEDRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-131994277DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229703.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A166FPR40.0A0A166FPR4_DAUCS; Uncharacterized protein
STRINGVIT_02s0087g00140.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.19e-39Trihelix family protein