PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000726

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 378aa MW: 41823.6 Da PI: 5.2173

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000726	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.7	1.6e-08	40	80	5	43
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk..stW 43 + +C CGn a+ C ++ C+ CC C+ hv st DCAR_000726 40 KPKCIKCGNVARSRCPYQSCKNCCAKAQNPCHIHVLkgSTS 80 568*******************************9423554 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MASSSPPVTD NSTPNRASAP ITTAISPAIN SSRNLRGLNK PKCIKCGNVA RSRCPYQSCK 60 NCCAKAQNPC HIHVLKGSTS FPDKAPATGS PSSEQQPHDV SPSGNPHRLS SVRQLSSNFS 120 QFNNLQNPIR SRKPLTVKEA GEINEWRYQK VQEYKDMNIE VENEAFDRYM RNVSLLEEVF 180 NVKSTPDGPV NDGGSPISDG NATSAEDERQ MEIAKIKSIL RSDPTRAENF RNRMQCAVDE 240 VLKKLQKTEA HDAGTESSEQ EEYVGSPGKK NLSWNEAVAA LIDKINKAQN EEDLKVCMEM 300 KDQLFNQRTE SPQAESESVP IPMALQTDDV VNLQTDDVVK PQFAHPPVKC VTTKPVDPEE 360 FKQISAYFDS LEDIEEL*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MASSSPPVTD NSTPNRASAP ITTAISPAIN SSRNLRGLNK PKCIKCGNVA RSRCPYQSCK  60
NCCAKAQNPC HIHVLKGSTS FPDKAPATGS PSSEQQPHDV SPSGNPHRLS SVRQLSSNFS  120
QFNNLQNPIR SRKPLTVKEA GEINEWRYQK VQEYKDMNIE VENEAFDRYM RNVSLLEEVF  180
NVKSTPDGPV NDGGSPISDG NATSAEDERQ MEIAKIKSIL RSDPTRAENF RNRMQCAVDE  240
VLKKLQKTEA HDAGTESSEQ EEYVGSPGKK NLSWNEAVAA LIDKINKAQN EEDLKVCMEM  300
KDQLFNQRTE SPQAESESVP IPMALQTDDV VNLQTDDVVK PQFAHPPVKC VTTKPVDPEE  360
FKQISAYFDS LEDIEEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017220756.1	0.0	PREDICTED: uncharacterized protein LOC108197576
TrEMBL	A0A166FQC6	0.0	A0A166FQC6_DAUCS; Uncharacterized protein
STRING	XP_009592240.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	2e-80

Link Out ? help Back to Top
Phytozome	DCAR_000726