PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000728

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 405aa MW: 44581.7 Da PI: 4.8272

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000728	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	28.4	5e-09	41	75	6	40
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 +C CGn+a+ C ++ C+ CC C+ hv DCAR_000728 41 PKCIKCGNNARSRCPYQSCKNCCAKAQNPCHIHVL 75 68*******************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-4	42	84	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MASSSPPVTN NATPNRASAP ITTTILPSIN SSGDFRGLVK PKCIKCGNNA RSRCPYQSCK 60 NCCAKAQNPC HIHVLKGSTS FPDKAPATGS PSSEQQPNDV SLSGNPHRLN SVRQLSSNFS 120 QFNNLQNPIR SRKPLTVKEA GEINEWRYEK VQEYKDMNVE VENEAFDRYM RNVSLLEEVF 180 NVKSTPDGPV NDGGSPISDG NATSAEDERQ MEIAKIKSIL RSDPTRAENF RNRMQCAVDE 240 VLKKLQKAEA HDAGTGSSEQ EEYVGSPGKK NLSWNEAVAA LIDKINKAQS VEDLVVCMEM 300 KDELFNQHAK STHAESESVP IPMALQTDDL TVGMEMEDQL FHQHTESIQA ASESVAIPTV 360 LQTDEVKPQI PDPPIKFATT KPVDPEEFKQ ISAYFDSLED IEEL*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MASSSPPVTN NATPNRASAP ITTTILPSIN SSGDFRGLVK PKCIKCGNNA RSRCPYQSCK  60
NCCAKAQNPC HIHVLKGSTS FPDKAPATGS PSSEQQPNDV SLSGNPHRLN SVRQLSSNFS  120
QFNNLQNPIR SRKPLTVKEA GEINEWRYEK VQEYKDMNVE VENEAFDRYM RNVSLLEEVF  180
NVKSTPDGPV NDGGSPISDG NATSAEDERQ MEIAKIKSIL RSDPTRAENF RNRMQCAVDE  240
VLKKLQKAEA HDAGTGSSEQ EEYVGSPGKK NLSWNEAVAA LIDKINKAQS VEDLVVCMEM  300
KDELFNQHAK STHAESESVP IPMALQTDDL TVGMEMEDQL FHQHTESIQA ASESVAIPTV  360
LQTDEVKPQI PDPPIKFATT KPVDPEEFKQ ISAYFDSLED IEEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017235610.1	0.0	PREDICTED: uncharacterized protein LOC108209272
TrEMBL	A0A166FQG1	0.0	A0A166FQG1_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-73

Link Out ? help Back to Top
Phytozome	DCAR_000728