PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000752
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 240aa    MW: 25971.8 Da    PI: 4.9423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000752genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-1758108155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GVr +  +g++v+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  DCAR_000752  58 SVYHGVRMRN-WGKYVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALCIKG 108
                  68*****998.**********843...6************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-3158118No hitNo description
PfamPF008476.2E-1158108IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2158117IPR016177DNA-binding domain
PROSITE profilePS5103221.48359116IPR001471AP2/ERF domain
SMARTSM003806.0E-3559122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3059117IPR001471AP2/ERF domain
PRINTSPR003676.2E-96071IPR001471AP2/ERF domain
PRINTSPR003676.2E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTASNSEPES SSNSFSSSPQ SPSSPGSTHF VKSCLESDKS LSDSSKKPKR IRHGNKHSVY  60
HGVRMRNWGK YVSEIREPRK KSRIWLGTFS TPEMAARAHD VAALCIKGSS AILNFPELAN  120
LLPRPASNSP RDVQAAAVKA AAMDQFDSTP PSLSPSSSST LSSSNSLSSL VLAIDLSAAS  180
DELTEIIELP SLETGFDSVE MMNNDFVFDD SVEMGWCYPS PWSMENAEND TGEFSFPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2054121977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216231.11e-174PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD38e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A162AZJ81e-172A0A162AZJ8_DAUCS; Uncharacterized protein
STRINGEOY297484e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]