PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000774
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 255aa    MW: 28513.8 Da    PI: 7.4583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000774genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-101451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ede+l ++++ +G+g          ++R++k+c++rw++yl
      DCAR_000774 14 RGPWSPHEDEILRNYIRNHGTG----------LKRCGKSCRLRWLNYL 51
                     89********************..........68************97 PP
2Myb_DNA-binding48.12.8e-1558100246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd ++  +   lG++ W+ Ia++++ gRt++++k++w++
      DCAR_000774  58 GSFTPEEDNIIFTLYSNLGSR-WSVIASKLP-GRTDNDVKNHWNT 100
                      79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-17554IPR009057Homeodomain-like
PROSITE profilePS512949.776951IPR017930Myb domain
SuperFamilySSF466892.9E-241298IPR009057Homeodomain-like
SMARTSM007172.0E-51353IPR001005SANT/Myb domain
PfamPF002494.6E-81451IPR001005SANT/Myb domain
PROSITE profilePS5129424.17652106IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2555106IPR009057Homeodomain-like
SMARTSM007172.6E-1456104IPR001005SANT/Myb domain
PfamPF002491.1E-1358100IPR001005SANT/Myb domain
CDDcd001672.28E-1159102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSPH EDEILRNYIR NHGTGLKRCG KSCRLRWLNY LRPDIKHGSF  60
TPEEDNIIFT LYSNLGSRWS VIASKLPGRT DNDVKNHWNT KLKKKLQATT DSYFTKINQT  120
PPGSTSAPST TATIITPSME SNYTLEFSTA IQDHGFLPEM PSLVNAVNYT QTGNYTAQDY  180
SSIPDSSIVL DKNTCDFVMD FGLGFAYDQM MSTGISNNNQ EQMSFEEALI NYPTSSYANS  240
AVCHNASSQF YGNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141067108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230030.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A166FRZ40.0A0A166FRZ4_DAUCS; Uncharacterized protein
STRINGPOPTR_0006s25060.16e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-57MYB family protein