PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000800

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 207aa MW: 23255.7 Da PI: 8.6835

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000800	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.8	1.1e-35	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp +++++f nvhklFG +n+++ +k++++++re++++s++ eAe r+ dPv G++g++++l + eq+k+el+++ DCAR_000800 11 ACAACKHQRRKCAPDCPLAPYFPPHRQAEFLNVHKLFGIRNIINAVKTVDPNQREIVVRSMIEEAELRVMDPVGGSCGMVKSLYDKCEQVKVELDMVF 108 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ DCAR_000800 109 QQ 110 66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.603	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-34	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTGPGTNVSQ ACAACKHQRR KCAPDCPLAP YFPPHRQAEF LNVHKLFGIR NIINAVKTVD 60 PNQREIVVRS MIEEAELRVM DPVGGSCGMV KSLYDKCEQV KVELDMVFQQ LAICRAKSKN 120 VEVRRGVRSF YDNLMPRHPG NGALRPPRNN IEISKKTSVK NENDGVEALQ IGVNEEKGAK 180 KMRNIDINKE SREIEENDLD KEDVKQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	2	111	4	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	2	111	4	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223390.1	1e-151	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A166FSU5	1e-150	A0A166FSU5_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_25.41	1e-39	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17834	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-33	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	DCAR_000800