PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000903

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 181aa MW: 19002.4 Da PI: 7.5193

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000903	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.2	1.8e-31	20	130	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 + ++ hTkv+gR+ R+R++ +ca r+F+L++eLG+ +d++ti+WLlqqa+pai+ +tgt++ +a ++ + + + ++g DCAR_000903 20 PAPRKDLHTKVEGRGSRIRMPTLCATRVFQLTKELGLATDGETIQWLLQQAEPAIIRATGTGTVPAIATvtA--DGTLRVPERKEGaaedvsktsgla 115 56789********************************************************88888555332..222222222222224444445556 PP TCP 89 ..............k 89 + DCAR_000903 116 pvgpspvsvpgygmA 130 666666666665431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.775	23	77	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.7E-25	23	92	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSSQKDFKGD SQVSGGPSQP APRKDLHTKV EGRGSRIRMP TLCATRVFQL TKELGLATDG 60 ETIQWLLQQA EPAIIRATGT GTVPAIATVT ADGTLRVPER KEGAAEDVSK TSGLAPVGPS 120 PVSVPGYGMA AENGMRMGGP HGAEPNQNQT SEARVSSDAE EEYDEVVLMG KKIRFRKGGI 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245466.1	1e-124	PREDICTED: transcription factor TCP9-like
Refseq	XP_017245482.1	1e-124	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A166FZ30	1e-128	A0A166FZ30_DAUCS; Uncharacterized protein
STRING	XP_009780060.1	6e-33	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000903