PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000904

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 154aa MW: 15877 Da PI: 8.8817

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000904	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.9	6.4e-29	20	112	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg........k 89 +++ ++Tkv+gR+ R+R++ +ca r+F+L++eLG+ +d+ ti+WLl+qa+pai+ +tgt++ +a ++ + s + + ++g + DCAR_000904 20 PAPKKERYTKVEGRGSRIRIPTLCATRVFQLTKELGLATDGATIQWLLEQAEPAIIRATGTGTVPAIATvtA--DGSLRVPETKEGaaedvsktS 112 67899********************************************************99999666332..333333322222223333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-22	22	92	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.709	23	77	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSSQKDFKGD SQVSGGPSQP APKKERYTKV EGRGSRIRIP TLCATRVFQL TKELGLATDG 60 ATIQWLLEQA EPAIIRATGT GTVPAIATVT ADGSLRVPET KEGAAEDVSK TSGLAAVGPS 120 PVSVPGYGMA AENGMKMNQN QASAGELCCR GRV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245378.1	1e-108	PREDICTED: transcription factor PCF2-like
Swissprot	Q9LT89	8e-31	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A166FZ74	1e-106	A0A166FZ74_DAUCS; Uncharacterized protein
STRING	Bo4g024860.1	9e-31	(Brassica oleracea)
STRING	XP_006401898.1	8e-31	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000904