PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000906

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 208aa MW: 21979.8 Da PI: 4.8938

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000906	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	73.3	7.5e-23	25	107	6	88
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 ++ ++ Tkv+gR+R + ++a caa++ +L++ LGf++ ++t+eWLl+ ++++ + +gt +sa+++ a s+ ++ +++++ DCAR_000906 25 KPMKDKQTKVEGRGRKIKMPAACAAQISQLTKDLGFKSSGETVEWLLEREEESMVQGPGTAIPSANAAGATSEALEVPEKKKA 107 6789********************************************************99999888666666666644333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-16	27	91	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	14.001	27	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSTVKDYDSD SQANSGSQQT SSGPKPMKDK QTKVEGRGRK IKMPAACAAQ ISQLTKDLGF 60 KSSGETVEWL LEREEESMVQ GPGTAIPSAN AAGATSEALE VPEKKKAEAV GQDGVPKTSG 120 FAPGNPNPVF VPGKGFFMVP EDGGEPQQVW PVPLALTRGI GMRMPGPYAP GWSSVSSDGM 180 TFECPGRNGE FLEFWGSLIL FYKVSCV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245402.1	1e-150	PREDICTED: transcription factor TCP21-like
TrEMBL	A0A166FZ89	1e-148	A0A166FZ89_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-14	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000906