PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000912

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 143aa MW: 14939 Da PI: 9.6811

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000912	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	43.7	1e-13	3	56	17	66
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....s 66 gR++ + +sa+caa + +L++ LGf++ +t++WLl a+ + +++ + DCAR_000912 3 GRGKNIKMSASCAAHISQLTKDLGFKSEDETLQWLLDRAEGRGTATPSSnavgG 56 8**************************************988777777755441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	9.627	1	48	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-9	4	53	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MQGRGKNIKM SASCAAHISQ LTKDLGFKSE DETLQWLLDR AEGRGTATPS SNAVGGASSE 60 TPKVPEKKKA EPVCQDIVPK TSGSAPVGPT PVFIPGKGFW MVPDDGGKPQ QVWPVPLALT 120 RGIGVKMQGP YAPGSSEQNQ KP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245446.1	1e-99	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A162A1P4	2e-98	A0A162A1P4_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-12	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000912