PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000914

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 254aa MW: 26801.9 Da PI: 6.0457

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000914	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.8	8.3e-30	111	224	4	115
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....kaaksaak 96 + + ++ hTkv+g +RR R++ +caar+F+L++eLG+ +d++ti+WLlqqa+pai+ +tgt++ +a+++ +++ + ++g + k++ DCAR_000914 111 QPAPRKDLHTKVEGGGRRTRIPTLCAARIFQLTKELGLATDGETIQWLLQQAEPAIIRATGTGTVPANATVTADGTLGVPDTNKGaaedvS--KTSGL 206 56788*********************************************************99999888444444444433333334321..11112 PP TCP 97 skksqksaasalnlakesr 115 ++++ + ++n s DCAR_000914 207 APGAPSPVS-NQNQTSVSC 224 222222222.122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.357	115	169	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-23	115	184	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MTYSSSSELP RVPGEEHKGA GESEGPLHWL LEHAEESITR AYGGSTKITE TDKEAELVHD 60 DGGSKTRGQA TVGPRPVFIP GRRYWIVPQG GGPQQVSPVS IYGSYPCEPS QPAPRKDLHT 120 KVEGGGRRTR IPTLCAARIF QLTKELGLAT DGETIQWLLQ QAEPAIIRAT GTGTVPANAT 180 VTADGTLGVP DTNKGAAEDV SKTSGLAPGA PSPVSNQNQT SVSCEARVSS AAEEEYDEVV 240 LMGKKIRFRK GGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245466.1	2e-81	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A166FZH7	0.0	A0A166FZH7_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-31	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000914