PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_000917

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 56aa MW: 6056.83 Da PI: 10.4718

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_000917	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	50.5	8.3e-16	15	55	9	49
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktie 49 + k+ gR+RR+R+sa+caar+F+L++ LG+ +d+ ti+ DCAR_000917 15 KEKNIKGQGRGRRIRVSAPCAARIFQLTEDLGLNSDGDTIQ 55 5566799********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	12.197	14	55	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.2E-11	21	55	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MTDSSSSELP RVPRKEKNIK GQGRGRRIRV SAPCAARIFQ LTEDLGLNSD GDTIQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245424.1	8e-26	PREDICTED: transcription factor TCP20-like
TrEMBL	A0A166FZJ9	8e-32	A0A166FZJ9_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-13	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_000917