PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_001199

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 224aa MW: 25112.9 Da PI: 6.6619

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_001199	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175	7.4e-55	62	157	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkk +Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk yl+kyrelegek DCAR_001199 62 KEQDRFLPIANVGRIMKKGIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVTPLKHYLAKYRELEGEK 157 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-50	57	165	IPR009072	Histone-fold
SuperFamily	SSF47113	1.18E-38	64	165	IPR009072	Histone-fold
Pfam	PF00808	1.3E-27	67	131	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.3E-18	95	113	No hit	No description
PROSITE pattern	PS00685	0	98	114	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.3E-18	114	132	No hit	No description
PRINTS	PR00615	4.3E-18	133	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEFHQNNNGR EVVVEDERHL IAGAPSPESP CSKSYCNNTN NNSNNNNNCN CQTNTSNTSN 60 NKEQDRFLPI ANVGRIMKKG IPANGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK 120 TINGDDIIWA ITILGFEDYV TPLKHYLAKY RELEGEKLNV PKQQRLHDQK AGMQYPSSSV 180 YSPPNLISQP SFVPSDPTFS LPFPQNSMQP QYKQESIDAV GHW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-43	62	152	2	92	Transcription factor HapC (Eurofung)
4g92_B	4e-43	62	152	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017247285.1	1e-168	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	Q9SIT9	6e-60	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A166G8J7	1e-166	A0A166G8J7_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400043176	1e-83	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	9e-63	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	DCAR_001199

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]