PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001338
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 182aa    MW: 19051.8 Da    PI: 8.502
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001338genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.93.6e-43241241100
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk+lrrkCa++ Cv+ap+fp ++p+kfanvhk+FGasnv k+l+++pe++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+++la +
  DCAR_001338  24 PCAACKLLRRKCAAGdCVFAPHFPPDDPSKFANVHKVFGASNVNKMLQEVPEHQRGDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDTLQTQLAIA 121
                  7***********9866********************************************************************************99 PP

       DUF260  98 kee 100
                  +++
  DCAR_001338 122 QAQ 124
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.76323125IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-4324122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKLNGRKQSG AAAGGLSAAA QVSPCAACKL LRRKCAAGDC VFAPHFPPDD PSKFANVHKV  60
FGASNVNKML QEVPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISCLQQQ IDTLQTQLAI  120
AQAQVLHLRV HVAATAGQAL CASTCGSPMT SKITMSNQTK PNSNMSMVVD QGSLGDFTWS  180
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-492312610112LOB family transfactor Ramosa2.1
5ly0_B6e-492312610112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230822.11e-133PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE93e-62LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A162B0151e-131A0A162B015_DAUCS; Uncharacterized protein
STRINGGorai.010G170700.12e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-56LOB domain-containing protein 4