PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001454
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 475aa    MW: 53522.2 Da    PI: 6.5087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001454genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-11176263798
                  .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +s+ lk++   + +++a +    +++ +s+tl +++    sW v+l++++++   ++ + W +F++a ++kegD++ F+l+g   ++++v v++
  DCAR_001454 176 SSHLLKKDHTKILNRYACKQlgLLEEMKSVTLFFKN---MSWVVNLKWDNGK--AYMDRTWYDFARASRVKEGDICAFMLSG-PPGKFRVCVYE 263
                  566666666666666654555645556777777777...9******887776..789***********************99.55555777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-10164264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278170265IPR003340B3 DNA binding domain
SMARTSM010190.0074170265IPR003340B3 DNA binding domain
PfamPF023626.8E-8176263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-9180264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-7193262No hitNo description
SuperFamilySSF1019364.32E-11279373IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-8282373IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.738283373IPR003340B3 DNA binding domain
SMARTSM010190.018284373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVNFCTNYNI HERNLVTQWH KLWVGKLRGS TFVCPNFGSD YIAGILILPK EFPIENSGTI  60
QERLLLHVAP GVVWNGKYSV ERNWIEGLEK MMLYYCIKPY YLIAMEYIGG PSFNLQIYNP  120
YGVEVNYTVT DKSETLSSMD RSFFNFSDIE VDKLCGTMFS NVYNSGLHVY NLLISSSHLL  180
KKDHTKILNR YACKQLGLLE EMKSVTLFFK NMSWVVNLKW DNGKAYMDRT WYDFARASRV  240
KEGDICAFML SGPPGKFRVC VYERDLLTKC NEKGIGHASK VTNWFKIVND VVLYAGQMEI  300
PRVFMEMNGG VLEETVNLIM GDGCSVAVNF SRSQSFFHGL KTLVDTYSIQ LNDVMVFHFL  360
SDSTFAVSLF KATGMEYKLN SSHGAATKKT GGIREEEVII LSDSSGDGEP DLAMDIDGGI  420
ADAQNLELAD DGNNEGNEFG DGNPLNMSFR VTLKKSHVDK RDHGARNICR FGKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166GC660.0A0A166GC66_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-08B3 family protein