PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001661
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 788aa    MW: 86898.9 Da    PI: 4.8823
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001661genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-08610670456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl........gLterqVkvWFqNrRakek 56 
                  +t + ++ +e+L + F++n+yp+++ +e LA++l        +   +qV  WF N R   +
  DCAR_001661 610 KTLYGEHATERLLQSFKENQYPQRAVKESLAAELaltvrqckEFYVKQVGKWFDNTRWSFR 670
                  6788899***************************7777777667778999*****997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0035407585IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
SMARTSM00384147789IPR017956AT hook, DNA-binding motif
SMARTSM003840.42112124IPR017956AT hook, DNA-binding motif
SuperFamilySSF466893.04E-9603678IPR009057Homeodomain-like
PROSITE profilePS5007111.742604672IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-10604671IPR009057Homeodomain-like
SMARTSM003895.1E-9606676IPR001356Homeobox domain
PfamPF000462.5E-5609670IPR001356Homeobox domain
CDDcd000866.99E-9610673No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MTQISFLEST TSLIDSQSRN HSSDQSGLPT ENAAKDCKQI HLGQQNDAAT KIYGLAELVI  60
DQKTVANSPS QVVETGKRGR GRPKKVLIGP EQLLPGQKTA IKSSSPLGDT GKRSRGRPRK  120
VQNSPTSLGG SVKVLPEKRK DAQELSVNSS RSLRSRSQEK SCEPDLSNIV AEGADREKTR  180
KKRKKRMDES RVDEFSRIRT HLRYLLHRIK YEKNFIDAYS GEGWKGQSLD KIKPEKELKR  240
AKAEIFGRKL KIRDLFQRLD LSRSEGRLPE ILFDSQGEID SEDIFCAKCG SKDVTLSNDI  300
ILCDGAFPCD DEGWLCPGCE CKIDCIKLLN DSQETNILVG DSWEKVFAEE AAAAASGKNL  360
NDDSGMPSDD SEDDDYDPGD PDLDEKVHGD ESSSDESDYH LSSDDMQALP QKEPCLGLPP  420
DDSEDDDYDP SALITEQVLK ESSCSDFTSD SEDLTVVLDD CKHYSIVEGP LTSTPDRPRN  480
EEGCGHSGQG DAVPLYPKRQ LESLDYKKLH DEEYGNRSSD SSDEDFMVTS SPDKKTYKSD  540
KEARVLLNFG SLTTDHGKVH GDLELDQKVS ESTHKRRYVK RSSVEGTNAS LSRSCESSAA  600
PVTSGKSTSK TLYGEHATER LLQSFKENQY PQRAVKESLA AELALTVRQC KEFYVKQVGK  660
WFDNTRWSFR NSSRVASVVA ESPSNEGTPH QKSINLSGSS LKSIPDNAAC DETKEEQDKG  720
SLGVTEGCDR DVTLNMVTDE GNGHISGITE TSNGNTKVGT ATEHTIILET PKPNMKDDLP  780
NTGIAEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185RKKRKKR
2180184KKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228785.10.0PREDICTED: pathogenesis-related homeodomain protein-like
SwissprotP487860.0PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A166GIJ40.0A0A166GIJ4_DAUCS; Uncharacterized protein
STRINGVIT_03s0091g00290.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-63Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain