PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001685
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 258aa    MW: 27480.7 Da    PI: 8.7346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001685genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001896118123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C ksFs+   L  H  +H
  DCAR_001685  96 YKCSVCEKSFSSYQALGGHKASH 118
                  9***********99999998887 PP
2zf-C2H214.50.0001150172123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+ksF++   L  H r+H
  DCAR_001685 150 HECTICHKSFPTGQALGGHKRRH 172
                  78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.6E-1395120IPR007087Zinc finger, C2H2
SuperFamilySSF576675.15E-895118No hitNo description
Gene3DG3DSA:3.30.160.608.6E-496118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00896118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13896118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576675.15E-8145172No hitNo description
PfamPF139122.2E-13149174IPR007087Zinc finger, C2H2
SMARTSM003550.043150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411150172IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTIEALSSPT IPTPPPSFHY KTLTLKQTNP TPTMHEPWMK KKRTKRPRSE TTETPPTEEE  60
YLALCLIMLA RGTTDTTTAS AAVMSHRVEA SSTDHYKCSV CEKSFSSYQA LGGHKASHRK  120
LANGAGEEVS ATTNSGTTAT SVLNPSGRAH ECTICHKSFP TGQALGGHKR RHYDGNIGSA  180
AASAVTSSSG NGSSHHKDLD FDLNLPASPE VAVPLAVNVD FGRKNLNSGE QEVESPHPGK  240
KARFSRPATM DGFGLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845MKKKRTKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231013.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A166GJG10.0A0A166GJG1_DAUCS; Uncharacterized protein
STRINGXP_010272343.11e-66(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-35salt tolerance zinc finger