PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001728
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ZF-HD
Protein Properties Length: 245aa    MW: 27221.7 Da    PI: 9.1285
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001728genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.22.6e-30964258
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 ++v+YkeClkNhAas+Gg+a+DGCgEfmps geeg+++a++C+ C+CHRnFHR+e e
  DCAR_001728  9 KAVKYKECLKNHAASMGGNATDGCGEFMPS-GEEGSIEAFTCSVCNCHRNFHRKEIE 64
                 679**************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-281163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-251165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-301263IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6631362IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.62E-18166228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-30166231IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26169225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEDQGVFKKA VKYKECLKNH AASMGGNATD GCGEFMPSGE EGSIEAFTCS VCNCHRNFHR  60
KEIEGGHHNH SSSCECYHHL NLGNRSSGIG RKLILGHHLP YPTSAAAALV PSRTAQPHQM  120
IMSSYNNIMA SLPSESDERE DANNNNNHQN GVGVGSAGIA MARPPHLLRK RFRTKFSQEQ  180
KEKMLNFAEK VGWKIQKQEE AVVQQFCQEV GVKRRVLKVW MHNNKHILAK KNSTNSTPTD  240
QNQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-241682261674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230365.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S04e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A166GKZ30.0A0A166GKZ3_DAUCS; Uncharacterized protein
STRINGPOPTR_0004s23860.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-76homeobox protein 31