PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001801
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 455aa    MW: 48271.3 Da    PI: 8.1935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001801genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.62.1e-13118144127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ykte+Cr +  +GtC+yG++C+FaHg+
  DCAR_001801 118 YKTEICRSWEDFGTCRYGAKCQFAHGK 144
                  9************************96 PP
2zf-CCCH27.74.8e-09160182326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  t +Cr ++  GtC+yG++C+F+H 
  DCAR_001801 160 TQICRAYSS-GTCSYGSQCRFSHE 182
                  889******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-17115149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-10116148IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-8117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399117145IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-7155183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6155184IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5157183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741157184IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7160182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MALRSGISPF SNTPVGVYNH TPRSPGFDLR ANSNVLNSSE NLESPIVRYY RSGGSPLSAI  60
ENLDISPNTL FKTSVKVEED VLVMDGILVG PVAASRVRSS SSTSDSGGSS SSGGKSFYKT  120
EICRSWEDFG TCRYGAKCQF AHGKEELRPT RFFNKSKSET QICRAYSSGT CSYGSQCRFS  180
HEQTNSPASG TDSPFTLASR TVSQNNSPAS ATDSPIPASK TQAVLPIKLE KAMNCAGRSP  240
LTARTISQNN SPASSKDSPL CAIPSEILLP MKLEKAAKCA GKSPLTTRTT ITLNNSPASL  300
EDSPFSVIPS ETLLPGKLEE SMNCAGKSLS TTQIVSQHNS PASATDSPVS MIPSKPGTVS  360
PINLEKPMTC AGKTSITPTV SPIKLQNAMD CSESFIFANS DWSPLDDDIE VALPCSSSAD  420
KALSREEVDA YINRVLYGPS KRKTLPAFAA ICPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-15118181466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249306.10.0PREDICTED: uncharacterized protein LOC108220134
TrEMBLA0A166GN080.0A0A166GN08_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-15C3H family protein