PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_001804

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 198aa MW: 22514.9 Da PI: 4.6654

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_001804	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.3	1e-34	10	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+P+deelvv++L++k++ +++ ++i+++d+y ++PwdL+ k+ +e ++wyf+s+r + +r+t+sg+Wk+ g+d+++ls+ DCAR_001804 10 LPPGFRFSPSDEELVVHFLQRKASLLPCHP-NIIPDLDLYPYDPWDLDGKAMEEGSKWYFYSRRTQ--------TRITRSGVWKSIGEDEPILSSesg 98 79***********************999.89**********977667789**9854........68999***********9888 PP NAM 96 ..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 k++++g+kk vfy g +++g kt+W+++ey+l DCAR_001804 99 ssKRKVIGIKKYYVFYIGePNSEGIKTNWILQEYSL 134 877788******88467899********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-44	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	43.759	10	163	IPR003441	NAC domain
Pfam	PF02365	4.4E-21	11	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGSGENNVNL PPGFRFSPSD EELVVHFLQR KASLLPCHPN IIPDLDLYPY DPWDLDGKAM 60 EEGSKWYFYS RRTQTRITRS GVWKSIGEDE PILSSESGSS KRKVIGIKKY YVFYIGEPNS 120 EGIKTNWILQ EYSLSDQCGS SSSARRKSKN DHSKWVVCRV YEHKSYGGED DGEQELSCLD 180 ELFLSLDDDY DEICSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-34	6	165	16	170	NAC domain-containing protein 19
3swm_B	9e-34	6	165	16	170	NAC domain-containing protein 19
3swm_C	9e-34	6	165	16	170	NAC domain-containing protein 19
3swm_D	9e-34	6	165	16	170	NAC domain-containing protein 19
3swp_A	9e-34	6	165	16	170	NAC domain-containing protein 19
3swp_B	9e-34	6	165	16	170	NAC domain-containing protein 19
3swp_C	9e-34	6	165	16	170	NAC domain-containing protein 19
3swp_D	9e-34	6	165	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240830.1	1e-144	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	3e-72	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A166GN27	1e-143	A0A166GN27_DAUCS; Uncharacterized protein
STRING	GLYMA08G19300.1	2e-82	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-63	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	DCAR_001804

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]