PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002027
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 230aa    MW: 24229.1 Da    PI: 8.6948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002027genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-083358227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 k +lC+ +     Ck+Gd+C+FaHg+
  DCAR_002027 33 KSRLCNKYNSAEGCKFGDKCHFAHGE 58
                 6799******99************96 PP
2zf-CCCH37.44.2e-12196220126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC +fa+ G C +GdrC+FaHg
  DCAR_002027 196 FKTKLCENFAK-GSCTFGDRCHFAHG 220
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-132962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-83062IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9153159IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-63358IPR000571Zinc finger, CCCH-type
SMARTSM003560.0253358IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.68E-1693176IPR004088K Homology domain, type 1
SMARTSM003225.1E-13102172IPR004087K Homology domain
PROSITE profilePS5008414.718103167IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.8E-17103171IPR004088K Homology domain, type 1
PfamPF000131.4E-12105169IPR004088K Homology domain, type 1
CDDcd001051.10E-15105168No hitNo description
Gene3DG3DSA:4.10.1000.104.6E-16194226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-9195225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.962195222IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8195221IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9196220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTGNNPAAPA RNHGQPSFGQ PSFPDGSSPP AIKSRLCNKY NSAEGCKFGD KCHFAHGEWE  60
LGRPTVPYHE DPRGMGPMPG SRFGSRMEPT PPSYGTGTSF GANATAKISV DASLAGAIIG  120
KNGVNSKQIC RQTGAKLSIR EHEADPNLRN IELEGTFDQI KQASQMVQEL IVSIGSASGP  180
PPKSHAMSGT GPANNFKTKL CENFAKGSCT FGDRCHFAHG AEDLRKSGI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226694.11e-169PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-82C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A166GUT21e-169A0A166GUT2_DAUCS; Uncharacterized protein
STRINGcassava4.1_012715m1e-115(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-64C3H family protein