PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002074
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 299aa    MW: 33029.1 Da    PI: 8.4535
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.1e-31146202158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+R+sgGrF
  DCAR_002074 146 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAIRRARASGGRF 202
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.6E-35144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.82145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.7E-27147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MHSASKSRKQ VEADPYNIPQ STLCPEPWWH NSGYNPLPPT MMQSNVSETS SVEQSADGKS  60
KSDGGQNEDD ENTTKDSQTN APMHSGLDGN FGQEHQSQHV TSSTSLKNDA SLTQPPQLEL  120
VGHSIVHPHL VDMHQTRMPL HLDMAQEPVY VNAKQYHGIL RRRQSRAKAE LEKKLIKDRK  180
PYLHESRHQH AIRRARASGG RFAKKSDVDN SKQSNEAKGN GKNSAPAASA QSFSSSGSEP  240
LPSDSNMNYY QEARGQTNAQ TYVNDGGMYR NQDGATSLVQ QWGNIRSDQA QQRATAMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19146210266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1046147e-50AB104614.1 Daucus carota C-HAP2B mRNA for CCAAT-box binding factor HAP2 homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258244.10.0PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_017258253.10.0PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ9LXV55e-47NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A166GW660.0A0A166GW66_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000277854e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-48nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]