PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002087
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 161aa    MW: 18641.2 Da    PI: 9.7554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002087genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-073272348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++ a++m+ gR ++++ks+w+ +l
      DCAR_002087  3 RWAATAAHMP-GRMDNDIKSYWHVHL 27
                     59999*****.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.513131IPR017930Myb domain
SuperFamilySSF466895.56E-9331IPR009057Homeodomain-like
CDDcd001670.00225327No hitNo description
Gene3DG3DSA:1.10.10.604.8E-8333IPR009057Homeodomain-like
CDDcd001670.0095489No hitNo description
SuperFamilySSF466895.56E-96190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-87195IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MCRWAATAAH MPGRMDNDIK SYWHVHLKKK LGKVNNRGVE GKQNFEDYKH YDDVATFGGL  60
DFIKAYYDKM SHMPGRTDND IKNYWHVHLK KKLGKVNSRG VEGKQNFEDY KHYDDVATIG  120
GLDYIKAYYD KMCKNVIVVN SITTQQNNQE KAIAFTNKRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166GWI61e-116A0A166GWI6_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.12e-11myb domain protein 96