PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002099

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 243aa MW: 26933.4 Da PI: 9.9409

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002099	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.6e-12	25	64	7	46
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 rr+++NReAAr+sR+RKka++++Le +L++ ++L+ DCAR_002099 25 LRRLAQNREAARKSRLRKKAYVQQLESSRMQLTQLEQDLQ 64 59*************************9999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-9	18	67	No hit	No description
SMART	SM00338	3.4E-8	19	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-7	23	68	No hit	No description
PROSITE profile	PS50217	8.749	26	65	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	26	41	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-9	26	65	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MMASASPRTD TSADGDIDDK TPATLRRLAQ NREAARKSRL RKKAYVQQLE SSRMQLTQLE 60 QDLQRARQQG KYISSTGDQS QSLSGNGALA FDAEYARWLE DHTRRANELR GALLMVKLEP 120 LTEHQMIAIT NLQQSAQQAE DALSQGMEAL QQSLADTLAG SLAQSNSAGN VASYMGQMAM 180 AMGKLGTLEN FICQADNLRK QTFQQLHRIL TTRQSARAVI AINDYFSRLR ALSSLWLARP 240 RE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467320.1	1e-116	PREDICTED: transcription factor TGA2-like isoform X5
Refseq	XP_011467321.1	1e-116	PREDICTED: transcription factor TGA2-like isoform X6
Swissprot	Q0JNL3	1e-103	TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBL	A0A162B373	1e-174	A0A162B373_DAUCS; Uncharacterized protein
STRING	Sb03g037560.1	1e-107	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16459	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-47	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_002099

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]