PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002110

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 144aa MW: 15808.7 Da PI: 8.4584

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002110	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.2e-12	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC++f+ tG C+yGd+Ck+ H++ DCAR_002110 51 PPLCNRFLSTGSCPYGDSCKYLHPK 75 69*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.37E-14	4	44	No hit	No description
Pfam	PF06220	2.5E-8	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	16.37	48	76	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-6	48	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-7	49	78	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-10	51	75	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-9	53	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MPLGKYYCDY CDKEFQDTAY ARKRHLQSIQ HQRAKSLWYQ NYPSALPFPS PPLCNRFLST 60 GSCPYGDSCK YLHPKQNLQS ANTSVSNFTG NFQSLDTNQQ AAGASSQGNI LRDGLGVSLG 120 NLPPSLKPPP EGGYPSLPFV DWG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ521279	4e-31	KJ521279.1 Daucus capillifolius clone cap279764 anonymous marker DC17915 genomic sequence.
GenBank	KJ521283	4e-31	KJ521283.1 Daucus carota subsp. carota clone car279759 anonymous marker DC17915 genomic sequence.
GenBank	KJ521289	4e-31	KJ521289.1 Daucus carota subsp. carota clone carA30254 anonymous marker DC17915 genomic sequence.
GenBank	KJ521293	4e-31	KJ521293.1 Daucus carota subsp. carota clone carA30261 anonymous marker DC17915 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017258482.1	1e-102	PREDICTED: zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	4e-40	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A166GX55	1e-101	A0A166GX55_DAUCS; Uncharacterized protein
STRING	VIT_14s0060g00610.t01	2e-55	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12008	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-46	C3H family protein

Link Out ? help Back to Top
Phytozome	DCAR_002110

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]