PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002125
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family FAR1
Protein Properties Length: 217aa    MW: 25828.9 Da    PI: 8.3775
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002125genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.97.6e-09127196177
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 
                  +fY eY++ +G  vrks+ k++   g +t++   Cs  g+ e ++ k    rr++++ +++C+ak+ +k+  +g ++
  DCAR_002125 127 EFYTEYGRLCGLVVRKSSAKYK--GGVMTHKYVECSSAGRFEGKTIK----RRRTNTRKCECEAKIILKNCPTG-YY 196
                  6****************99888..8989999999*****99987766....8889999**********998544.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-5127196IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYYFQIVFHI FPYTTFRVLS FGTQWRAFMK KHECILTSLY FRFCCCTPIL IYFDNLRVYL  60
TLYLLKITDH NLLLSIPWET NELNEDIYVD SYKYTSPDGE EYWIPKCDKK SKPYVNQMFP  120
DVEAVFEFYT EYGRLCGLVV RKSSAKYKGG VMTHKYVECS SAGRFEGKTI KRRRTNTRKC  180
ECEAKIILKN CPTGYYIGTF LHDNYIFIHQ DFEVLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228609.12e-31PREDICTED: protein FAR1-RELATED SEQUENCE 11-like, partial
TrEMBLA0A166GXL41e-160A0A166GXL4_DAUCS; Uncharacterized protein