PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002324
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 141aa    MW: 15791.6 Da    PI: 8.3868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002324genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202375256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd s+n  ++r +lg+f taeeAa+a+++a+ +l+g+
  DCAR_002324 23 RYRGVRRRP-WGKYAAEIRDSSQNR-QQRLWLGTFETAEEAARAYDKAAFNLKGH 75
                 6********.**********66653.6*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-152375IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-212383IPR016177DNA-binding domain
PROSITE profilePS5103223.962382IPR001471AP2/ERF domain
CDDcd000189.79E-282382No hitNo description
Gene3DG3DSA:3.30.730.109.3E-302383IPR001471AP2/ERF domain
SMARTSM003802.4E-332388IPR001471AP2/ERF domain
PRINTSPR003671.3E-112435IPR001471AP2/ERF domain
PRINTSPR003671.3E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEGSSKGKNA QENKGGTGSE EVRYRGVRRR PWGKYAAEIR DSSQNRQQRL WLGTFETAEE  60
AARAYDKAAF NLKGHLAILN FPREYYSKLP SYIYPPGPCS SVSPSSSVSD GKQIIEFEYL  120
DDSVMDELLE SEAEKIKSKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-34161407130Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223341.11e-100PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A166H3A82e-98A0A166H3A8_DAUCS; Uncharacterized protein
STRINGXP_009590142.13e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]