PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002368

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HSF

Protein Properties

Length: 329aa MW: 36927.7 Da PI: 6.3231

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002368	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.1	2.8e-33	42	132	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ ++++d+++++++sws+ +nsfv++d+++fa+++LpkyFkhsn++SF+RQLn+YgF+kv+ ++ eF+ ++F +g+++ll++ik DCAR_002368 42 FLAKICDLVDDSRTNHIVSWSKGNNSFVIWDPDSFANQLLPKYFKHSNLSSFIRQLNTYGFRKVDPDK---------LEFASEWFLRGQRHLLKQIK 129 9**************************************************************999.........78**************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k DCAR_002368 130 RRK 132 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.52E-33	37	131	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.1E-36	38	131	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.6E-52	38	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	42	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-29	42	131	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	81	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	93	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDQSGLVPML EVTGSSSSHS RGLCVAVPQA LEGLQGASPP PFLAKICDLV DDSRTNHIVS 60 WSKGNNSFVI WDPDSFANQL LPKYFKHSNL SSFIRQLNTY GFRKVDPDKL EFASEWFLRG 120 QRHLLKQIKR RKPPPHPQNL LQGPSLSCVE VGQFGSEAET DCLQSETKVL RVELVRLRQE 180 HQNTKAHLKA IEFRLRDTEI KQQHIMGFLT RMIRNPSLVQ KLFESGRRGE LVEAISKTKS 240 KGTDQVCGSV EFREISQGKR QIYVELGSKD LTDAEIPEMN TLSIEMQAVE ETSKGSDEGQ 300 DGGNNGLDKK FWEDLLNDTN EEELGLFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-24	40	131	27	129	Heat shock factor protein 1
5d5v_B	1e-24	40	131	27	129	Heat shock factor protein 1
5d5v_D	1e-24	40	131	27	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	LKQIKRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256560.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Refseq	XP_017256564.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
TrEMBL	A0A166H4L7	0.0	A0A166H4L7_DAUCS; Uncharacterized protein
STRING	cassava4.1_029306m	1e-102	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	2e-83	heat shock transcription factor A6B

Link Out ? help Back to Top
Phytozome	DCAR_002368