PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002486

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 262aa MW: 29597.4 Da PI: 6.407

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002486	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.1e-20	92	141	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W++eIrdp + r++lg+f t+eeAa+a+++a+k+++g DCAR_002486 92 KYRGIRQRP-WGKWASEIRDPQ----KgVRVWLGTFSTPEEAARAYDEAAKRIRG 141 8******.******94....35**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.7E-33	92	150	IPR001471	AP2/ERF domain
CDD	cd00018	1.76E-35	92	151	No hit	No description
Pfam	PF00847	5.9E-14	92	141	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.933	92	149	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-22	92	151	IPR016177	DNA-binding domain
SMART	SM00380	1.0E-40	92	155	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	93	104	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	115	131	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MCGGAIISDF ERPPLTTGSR KVNKHDLWDQ PGFASTLPQL SGSWTDHFDA KLPQLPLHGR 60 PLKPKKIITK EEVSEEGEKL SQEGNKRSRK NKYRGIRQRP WGKWASEIRD PQKGVRVWLG 120 TFSTPEEAAR AYDEAAKRIR GDKARLNFPD DHPPEPVPLP PLAKKQCTPK AITEINSPNF 180 SSPLMGMEFS TTFQPPNYCA SHGADELELK DDHQVSNMES SLLGWEAEIM SQIGVTESDV 240 YRWMMMDNLD QIANHLMQEF E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-22	93	149	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB354582	0.0	AB354582.1 Daucus carota DcERF2 mRNA for transcription factor DcERF2, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231969.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBL	A0A169WSD5	0.0	A0A169WSD5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	1e-45	ethylene-responsive element binding protein

Link Out ? help Back to Top
Phytozome	DCAR_002486