PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002547

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SBP

Protein Properties

Length: 976aa MW: 107974 Da PI: 6.4106

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002547	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.2	3.2e-40	126	203	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC vhska++++v +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ DCAR_002547 126 VCQVDDCRADLSSAKDYHRRHKVCAVHSKATKAMVGSAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTHP 203 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-32	120	188	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.735	124	201	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-37	126	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.0E-29	127	200	IPR004333	Transcription factor, SBP-box
CDD	cd00204	3.50E-7	742	861	No hit	No description
SuperFamily	SSF48403	4.82E-9	744	863	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-6	755	865	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.549	801	822	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MEWDLNDWKW DGDQFTAAPL RSVAADCRSR QFFPIGPEIP VVTGLSNSSS SCSEEIDLRN 60 EREQRELEKR RRVFVVDDDE LDDESGSLNL NLGGMVYPVA NGEVENWNGK SGKKTKLGGS 120 ASSGAVCQVD DCRADLSSAK DYHRRHKVCA VHSKATKAMV GSAMQRFCQQ CSRFHLLQEF 180 DEGKRSCRRR LAGHNKRRRK THPENSNTGV PVNDELSNSY LLISLLRILS NMHTDSSDQM 240 KDQDLLSHLL KNLASVAGTI NEGNLSGLLN GSSKLQLQNF VASRGQQLSR PTGQCTVMPS 300 SGMTQKREFV DNVSGGKFQT PPAQLSNIHF PTKDCIAANA NASNAKMEST KELNFDLNDV 360 YDDSEECMEP LERSDAPICV ENGSAGYPIW IHQDSDKSSP PQTSGNSGSL STQSPSSSSG 420 EAQLVQVRTD RIVFKLFGKN PSEFPLVLRS QILGWLAHSP TDIESYIRPG CVILTIYLRM 480 EKSTWEVVCS DLSFSLRKLL DSDSFWKEGW IYTRVQNRVA FVHDGEVVLD TQLTVTNDKN 540 CNISSIRPIA VTVSENANFL VKGSNMSQST RILCALEGMY LVQQSCSELM DGCGSLSESD 600 KGQSLSFPCS IPNVMGRGFI EVEDQTLGTS FFPFIVAEKD VCSEICTLES ALELAETTSG 660 IKGETEHLEV HDQALEFVHE MGWLLHRTQL KIRLGPNDPN LDLFSFKRFR YLMEFSLDHD 720 WCAVVKKLLC ILFSGIVDSG EHPNIERALL DIGLLHRAVQ RNCRPMVQAL LSFIPANVID 780 KYGPEQTLPG HIFRPDSAGP GGLTPLHIAA SSGGYETVLD ALTDDPQMVG LEAWKNARDG 840 AGLTPHDYAF QRGCHSYINM IQKKTKTRSG QGHVVVDIPG TIKQKLPGGP KPTEVSSFQT 900 EKAIMKLVQS NCNLCEQKLA YGNYRRSLAS YRPAMLAMVA IAAVCVCVAL LFKSSPEVLY 960 VFQPFRWEHL KFGSS*

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MEWDLNDWKW DGDQFTAAPL RSVAADCRSR QFFPIGPEIP VVTGLSNSSS SCSEEIDLRN  60
EREQRELEKR RRVFVVDDDE LDDESGSLNL NLGGMVYPVA NGEVENWNGK SGKKTKLGGS  120
ASSGAVCQVD DCRADLSSAK DYHRRHKVCA VHSKATKAMV GSAMQRFCQQ CSRFHLLQEF  180
DEGKRSCRRR LAGHNKRRRK THPENSNTGV PVNDELSNSY LLISLLRILS NMHTDSSDQM  240
KDQDLLSHLL KNLASVAGTI NEGNLSGLLN GSSKLQLQNF VASRGQQLSR PTGQCTVMPS  300
SGMTQKREFV DNVSGGKFQT PPAQLSNIHF PTKDCIAANA NASNAKMEST KELNFDLNDV  360
YDDSEECMEP LERSDAPICV ENGSAGYPIW IHQDSDKSSP PQTSGNSGSL STQSPSSSSG  420
EAQLVQVRTD RIVFKLFGKN PSEFPLVLRS QILGWLAHSP TDIESYIRPG CVILTIYLRM  480
EKSTWEVVCS DLSFSLRKLL DSDSFWKEGW IYTRVQNRVA FVHDGEVVLD TQLTVTNDKN  540
CNISSIRPIA VTVSENANFL VKGSNMSQST RILCALEGMY LVQQSCSELM DGCGSLSESD  600
KGQSLSFPCS IPNVMGRGFI EVEDQTLGTS FFPFIVAEKD VCSEICTLES ALELAETTSG  660
IKGETEHLEV HDQALEFVHE MGWLLHRTQL KIRLGPNDPN LDLFSFKRFR YLMEFSLDHD  720
WCAVVKKLLC ILFSGIVDSG EHPNIERALL DIGLLHRAVQ RNCRPMVQAL LSFIPANVID  780
KYGPEQTLPG HIFRPDSAGP GGLTPLHIAA SSGGYETVLD ALTDDPQMVG LEAWKNARDG  840
AGLTPHDYAF QRGCHSYINM IQKKTKTRSG QGHVVVDIPG TIKQKLPGGP KPTEVSSFQT  900
EKAIMKLVQS NCNLCEQKLA YGNYRRSLAS YRPAMLAMVA IAAVCVCVAL LFKSSPEVLY  960
VFQPFRWEHL KFGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	118	200	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	72	KRRRV
2	195	201	KRRRKTH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226642.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A169WU80	0.0	A0A169WU80_DAUCS; Uncharacterized protein
STRING	VIT_05s0020g00700.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	DCAR_002547