PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002594

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 248aa MW: 26652.8 Da PI: 9.8693

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002594	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	27	126	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaa. 95 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s +sn+s + + +k+a+ DCAR_002594 27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-TVSVSLRNSNNSLSaplE-QKQAPq 122 789******************************************************************888.444444444333332221.222211 PP TCP 96 kskk 99 +++ DCAR_002594 123 LNQH 126 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.8E-36	33	127	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSSPPPPPLP DSQKQLATAT PTNGTVAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPANFSTV SVSLRNSNNS LSAPLEQKQA 120 PQLNQHLFTP TPFILGKRAR EEDSIRAGEE KSDEVSEHSV GPAGGFWALP GRPDYGQVWS 180 FAAGSDMVVP TPVNMSQQNR YMQVQGEASA ARVGNYLPIT QGHLNLLASL SGSHQQSGGG 240 RREEDHH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148753	0.0	FJ148753.1 Daucus carota subsp. sativus clone BAC C155J02 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238778.1	0.0	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	2e-81	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A166H8G5	0.0	A0A166H8G5_DAUCS; Uncharacterized protein
STRING	Solyc04g009180.1.1	1e-95	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-61	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_002594