PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002633
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 314aa    MW: 35749 Da    PI: 9.8575
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002633genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.6e-1857147286
     trihelix   2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt +e+l+Li+a+r +++r ++ +           + +W++v ++++  g+ rs++qC++kw+nl ++ykk++e e k    s+s+ p +  ++
  DCAR_002633  57 WTLEETLVLITAKRLDDQRRSKPNnvdpttprhTGELRWKWVENFCWNNGCLRSQNQCNDKWDNLLRDYKKVREYETKS---SQSNLPSYWAMD 147
                  **************9999888754466666666999*****************************************95...556899999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0549122IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-453123IPR009057Homeodomain-like
PfamPF138372.4E-1356148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSEPPNTFH RHHQQPPQRH HLPPLLHGAN INITTSSATN TPTSPPVIYR DYRKGNWTLE  60
ETLVLITAKR LDDQRRSKPN NVDPTTPRHT GELRWKWVEN FCWNNGCLRS QNQCNDKWDN  120
LLRDYKKVRE YETKSSQSNL PSYWAMDKQQ RKDHNLPSNL THQIYQQLQE VVQKKSPLKI  180
LPPPTPQPPM HHQQPPPPPQ PSTVAPAPVV SEASVSSETE WGSHLDPDTK RKRVRDIGSS  240
IVHGASSLAR ALKRSEEKKE KRHRELMELE EQRIRLDEAQ NEAQREGVAS LVAAVNNLSG  300
AIQSLAADQR PGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229937.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A166H9J20.0A0A166H9J2_DAUCS; Uncharacterized protein
STRINGcassava4.1_022367m3e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-49Trihelix family protein