PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002808

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 163aa MW: 18166.2 Da PI: 6.3572

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002808	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.1	6.9e-55	35	130	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP+nakisk+ ket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy+eplk yl++yrelegek DCAR_002808 35 KEQDRLLPIANVGRIMKQILPSNAKISKEGKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDDYAEPLKRYLHRYRELEGEK 130 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-52	31	154	IPR009072	Histone-fold
SuperFamily	SSF47113	1.43E-39	37	144	IPR009072	Histone-fold
Pfam	PF00808	1.2E-26	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-19	68	86	No hit	No description
PROSITE pattern	PS00685	0	71	87	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.1E-19	87	105	No hit	No description
PRINTS	PR00615	2.1E-19	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MVDKIATNYS ERSATFSFGG GFGGSTREDT RDVIKEQDRL LPIANVGRIM KQILPSNAKI 60 SKEGKETMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CWALGSLGFD DYAEPLKRYL 120 HRYRELEGEK ANQHHRGGGN INMNHNIQEI FEEASNQPAA PN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-45	34	125	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-45	34	125	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221054.1	1e-119	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	9e-64	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A166HEI8	1e-118	A0A166HEI8_DAUCS; Uncharacterized protein
STRING	VIT_07s0104g01640.t01	5e-70	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-66	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	DCAR_002808

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]