PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002889
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 153aa    MW: 16972.1 Da    PI: 6.2664
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002889genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.6e-151155145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr e +  r v fskRr+g++KKA+ L  L +a +a+++fs+ gk
  DCAR_002889 11 KRKEKQQDRMVAFSKRRKGLFKKAHQLHALSAAHIAILVFSPAGK 55
                 56788999***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-19362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.904363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-21478IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-14525IPR002100Transcription factor, MADS-box
PfamPF003193.4E-171457IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGTGKKKIEI KRKEKQQDRM VAFSKRRKGL FKKAHQLHAL SAAHIAILVF SPAGKPYVCG  60
DPCFDDIVDK YYSGATANAA ADDNDVVNCN NRSTYGDGND ADEDCKEIGE LKLWLKRMDF  120
DGSDNVDDLL LAKNDLEQVR DKLIKNVADY GE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11027KRKEKQQDRMVAFSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251885.11e-109PREDICTED: floral homeotic protein APETALA 1-like
TrEMBLA0A162B5F61e-107A0A162B5F6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-09AGAMOUS-like 61