PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002967
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 715aa    MW: 77669.9 Da    PI: 6.6717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002967genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.1e-13464564198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l +sdv++++r+v+pkk ae++  +++k++++ + + d +g   W++ ++   ++s + ++     eFv+ ++L +gD ++ + ++r+++e+v+
  DCAR_002967 464 FQKQLQNSDVNNLKRMVIPKKAAEAYlpKLDKKGGIYIEMIDVDGsHIWNFIYSSqANYSLKELINLDPGEFVNKHQLSTGDLILVY-EDRESKEYVI 560
                  99**************************99999*********999899*****77677777788889999************99998.4458888888 PP

                  EEE- CS
           B3  95 kvfr 98 
                   +++
  DCAR_002967 561 EARK 564
                  8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5092013.095180260IPR018108Mitochondrial substrate/solute carrier
Gene3DG3DSA:1.50.40.105.9E-56181445IPR023395Mitochondrial carrier domain
PfamPF001532.1E-9181259IPR018108Mitochondrial substrate/solute carrier
SuperFamilySSF1035061.09E-54181442IPR023395Mitochondrial carrier domain
PRINTSPR009269.7E-5185198IPR002067Mitochondrial carrier protein
PRINTSPR009269.7E-5198212IPR002067Mitochondrial carrier protein
PROSITE profilePS5092015.004269351IPR018108Mitochondrial substrate/solute carrier
PfamPF001531.2E-6275352IPR018108Mitochondrial substrate/solute carrier
PfamPF001535.8E-20360446IPR018108Mitochondrial substrate/solute carrier
PROSITE profilePS5092019.231360445IPR018108Mitochondrial substrate/solute carrier
PRINTSPR009269.7E-5369391IPR002067Mitochondrial carrier protein
Gene3DG3DSA:2.40.330.108.8E-18457567IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-12462566IPR015300DNA-binding pseudobarrel domain
CDDcd100177.85E-14462564No hitNo description
PfamPF023621.2E-8464563IPR003340B3 DNA binding domain
SMARTSM010192.8E-6464566IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MVPGNNPLES FHNSVQLVKN AFAPFEFSFQ KVTNDFQHCW SASRNGADNA ISFVAKKSEL  60
RILCGSHSKV GKEWSVECFL GGLFDDLVQN LQKLNLGAGE IECTISDLCL GTPSGNKFNH  120
VKALVGIFKG RRTDDSGVLL NVKFARVGGV PAGNVAVIDS EKEMTCEAST VAPTVDIPAE  180
SVFKSALAGG ISCAFSSFIM HPVDTIKTQV QASTLTLPEI IVKIPQIGAR GLYKGSIPAV  240
SGQFLGHGLR TAICEASKFV LVYLVPTLPD IQVQSAASLW STVLGTTFRV PTEVIKQRLQ  300
AGIYENVGEA LIGTWQQDSL KGFFRGTGAT LCREVPFYVA GAGVYAESKK AVQHLLGREL  360
EPWETILVGA VSGGLASVTT TPFDVIKTRM MTAIPGQPVS MSTIAFSIIR QEGPLGLFKG  420
AVPRFFWVAP LGAMNFAGYE LLRKAMDRTN AQKVIKESKL KFLFQKQLQN SDVNNLKRMV  480
IPKKAAEAYL PKLDKKGGIY IEMIDVDGSH IWNFIYSSQA NYSLKELINL DPGEFVNKHQ  540
LSTGDLILVY EDRESKEYVI EARKTLSKSP NDSPKKKILK THSNKASARG QAPDDTPMND  600
VPAAAPPPSG VKDNLPVKLE PTDDATNEIQ VMDCTNADSG MPLPDYGFDA YNPSGTIDNV  660
LNLPNPNDSS SSLIYNDMNF PSDYLFNMWE PGASSTQPIP SFQNLCFDDI LKGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-314605641105B3 domain-containing transcription factor FUS3
6j9b_D9e-314605641105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229384.10.0PREDICTED: S-adenosylmethionine mitochondrial carrier protein
TrEMBLA0A166HRN10.0A0A166HRN1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-31B3 family protein