PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002986
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26327.3 Da    PI: 4.4623
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002986genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-192173456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ft++q++ Le+ Fe + ++  +++ + Ak+lgL  rqV +WFqN+Ra++k
  DCAR_002986 21 KRRFTDDQIKSLETIFECDTKLEPRKKLQVAKELGLHPRQVAIWFQNKRARYK 73
                 679*************************************************9 PP
2HD-ZIP_I/II115.62.9e-3720110292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   krr++++q+k+LE+ Fe ++kLep++K ++a+eLgl+prqva+WFqn+RAR+k+kqlEk+y++L+++yd+l+++ + L+ke+++L  + +
  DCAR_002986  20 SKRRFTDDQIKSLETIFECDTKLEPRKKLQVAKELGLHPRQVAIWFQNKRARYKSKQLEKEYSVLQAKYDNLATQFDILKKEKQSLVLQFQ 110
                  69************************************************************************************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.18E-17877IPR009057Homeodomain-like
PROSITE profilePS5007117.071575IPR001356Homeobox domain
SMARTSM003891.6E-161779IPR001356Homeobox domain
PfamPF000463.3E-162073IPR001356Homeobox domain
CDDcd000862.79E-142176No hitNo description
Gene3DG3DSA:1.10.10.602.7E-172182IPR009057Homeodomain-like
PRINTSPR000314.9E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000314.9E-55571IPR000047Helix-turn-helix motif
PfamPF021839.2E-1475115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MADPECYDTY ETLSRKKSNS KRRFTDDQIK SLETIFECDT KLEPRKKLQV AKELGLHPRQ  60
VAIWFQNKRA RYKSKQLEKE YSVLQAKYDN LATQFDILKK EKQSLVLQFQ KLHDMVGKSG  120
EERQEMYKNI SIGKSDDDDD NECQMQPDLL SCGSEHGLGL LSDDYNIMKA EYFKLDEEET  180
ERLNMVEVDL GDGSLTSTED WENLESSVIF DQPSSSDSQW WDFWA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241533.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A166HSB41e-165A0A166HSB4_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s17680.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-50homeobox 12