PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003001
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 648aa    MW: 70694.2 Da    PI: 5.4598
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003001genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.43.2e-18203246145
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                  kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+ L++e+
  DCAR_003001 203 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKRILDLMNVENLSREN 246
                  79*******************.*******************9986 PP
2Response_reg83.75.5e-28201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll ++l++ +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ e++ + ++ Ga+
   DCAR_003001  20 VLAVDDDPTCLRLLDTLLRRCQY-NVTTTSQAVVALQMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTELVMKGISHGAS 114
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   DCAR_003001 115 DYLLKPIRIEELKN 128
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-4217141No hitNo description
SuperFamilySSF521721.18E-3617142IPR011006CheY-like superfamily
SMARTSM004481.1E-3318130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.34719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2520128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.00E-2521134No hitNo description
Gene3DG3DSA:1.10.10.601.2E-18201255IPR009057Homeodomain-like
SuperFamilySSF466892.69E-11201254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-14203246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTVDDKIDGE KEQFPVGMRV LAVDDDPTCL RLLDTLLRRC QYNVTTTSQA VVALQMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAYG DTELVMKGIS HGASDYLLKP  120
IRIEELKNIW QHVIRRKKLE PKDSKNSDKP CVDSGDSREG FQGIGEPEPN GKNNRKRKDQ  180
NEDDDEERDE NGQNDDDPSM QKKPRVVWSV ELHRKFVAAV NQLGLDKAVP KRILDLMNVE  240
NLSRENKYRL YLKRISCVTS QQANMAAALG NADSAFLRMA SLNALGNLPT MDSSGQFQSV  300
AFNSFSPSSV LGRLNSPAGL GIRSLSSSGA VQFGLAQNSS SSINGTANFH SAPQTGNQNG  360
ILYGMPMSTE IHQLPHSNNV NYGVLPVTES MIYTNSISSL DGKVNVTGLS NSQYSASDGF  420
SDVKIHVGSS SNACFGMPNN SLVVDGHHLH SQGLGGSVNQ SLATANSLNS GFSFQMPDIE  480
RRGTWPSAVQ SLGDQTNLHR SNDCFRHTSP SILRDNSLLV PLNIGSDPHD ASSFTLRPTH  540
VPDGNIDLLQ CQSASSNTLQ GWGDSKQDAV PHQTNLISSS VNSWLPQGVS SSFDPRFSRL  600
LQVQCLCQEL RDMSDAMELV LISITSLEAN AWISVTFADL QPGPLTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18199256164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227759.10.0PREDICTED: two-component response regulator ARR12
SwissprotA2X1N21e-130ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A166HSS20.0A0A166HSS2_DAUCS; Uncharacterized protein
STRINGXP_002515447.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12