PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003241

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 93aa MW: 10257.8 Da PI: 7.1821

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003241	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	64.3	2.5e-20	10	79	1	70
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 l++ L++ A++v++g+ e+a+ L+++s+l+spdgd+mqR+aa+fteALa r+++ +++l kal++++ + DCAR_003241 10 LIHILVTTANHVAAGSIENANISLEQISHLSSPDGDTMQRIAAHFTEALADRMLKRWPGLHKALNSTKIT 79 6899************************************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.882	1	92	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.5E-18	10	79	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MKLEERGLYL IHILVTTANH VAAGSIENAN ISLEQISHLS SPDGDTMQRI AAHFTEALAD 60 RMLKRWPGLH KALNSTKITL VSEERLGHYV LL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256387.1	4e-49	PREDICTED: scarecrow-like protein 3
Swissprot	Q9LPR8	1e-36	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A166HZL1	2e-60	A0A166HZL1_DAUCS; Uncharacterized protein
STRING	EOY17606	2e-42	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	4e-39	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	DCAR_003241

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]