PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003269
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 200aa    MW: 23208.5 Da    PI: 7.9923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003269genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1080172181
                  EEEE-..-HHHHT.T-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                  f+k+lt+sd  k  +rl l k++++++          + ++++++ + ++d +g+++e+k++ +  +  ++ t+ W +F++++gL  ++D ++
  DCAR_003269  80 FQKQLTKSDLKKDqQRLLLNKSHVKQFlypllssgevKDVENREIGVHVYDAEGKVYEMKFKLWAEKAYVLKTNEWLRFCSEHGLVeTKDWIT 172
                  99********9987899*******999*******999888899999***************99***987888899*********985667665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1280176IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006580189IPR003340B3 DNA binding domain
CDDcd100179.89E-1180191No hitNo description
SuperFamilySSF1019368.63E-1180178IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MANSSSNVSN SSFQEESRDV YEAALLLYNM KHITLDPQAA HQLEQEKARQ KYILQCSRPN  60
YQDHLPPVQG LVGNYCSKPF QKQLTKSDLK KDQQRLLLNK SHVKQFLYPL LSSGEVKDVE  120
NREIGVHVYD AEGKVYEMKF KLWAEKAYVL KTNEWLRFCS EHGLVETKDW ITIWMFKHAT  180
DTHQLCFAII PNYNLLPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252504.16e-49PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A162B6G71e-148A0A162B6G7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-24B3 family protein