PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003339
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 114aa    MW: 12833.5 Da    PI: 6.9331
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003339genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB156.25.7e-49398297
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 +e+dr+lPianv+rimk++lPanakisk+aket+qec+sefisfvt easdkc++e+rkt+ngdd++wal++lG+++++e+   yl k+re+e+e+
  DCAR_003339  3 EEHDRLLPIANVGRIMKQILPANAKISKEAKETIQECASEFISFVTVEASDKCHKENRKTVNGDDICWALGSLGLDHHAEATGRYLYKFREFERER 98
                 799******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.7E-452106IPR009072Histone-fold
SuperFamilySSF471131.26E-336104IPR009072Histone-fold
PfamPF008089.5E-27872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.1E-143654No hitNo description
PRINTSPR006158.1E-145573No hitNo description
PRINTSPR006158.1E-147492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MVEEHDRLLP IANVGRIMKQ ILPANAKISK EAKETIQECA SEFISFVTVE ASDKCHKENR  60
KTVNGDDICW ALGSLGLDHH AEATGRYLYK FREFERERAN QSKAITAGRE QKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-39293192Transcription factor HapC (Eurofung)
4g92_B6e-39293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359141e-33AC235914.2 Glycine max clone GM_WBc0225O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252665.12e-80PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040272e-53NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A162B6P25e-79A0A162B6P2_DAUCS; Uncharacterized protein
STRINGcassava4.1_026425m1e-58(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-56nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]