PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003410
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 438aa    MW: 48570.9 Da    PI: 6.7552
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003410genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-152064147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r++WT+eE++++++a k++G   Wk I +++  ++t+ q++s+ qk+
      DCAR_003410 20 RQSWTEEEHQKFLEALKLYGRA-WKHIEEHIA-TKTAVQIRSHAQKF 64
                     899*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-151469IPR009057Homeodomain-like
PROSITE profilePS5129420.4791569IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-101765IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-161867IPR006447Myb domain, plants
SMARTSM007179.4E-131967IPR001005SANT/Myb domain
PfamPF002493.2E-132063IPR001005SANT/Myb domain
CDDcd001674.25E-102265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MESAREDMQA RKPYTITKQR QSWTEEEHQK FLEALKLYGR AWKHIEEHIA TKTAVQIRSH  60
AQKFFTKLAR ESSGNEENFG KPIEVPPPRP KRKHMHPYPR NIVKVNSGTS VMIEDNISSP  120
NFPIPGQENQ SPGSVLSALG SEITGATDSN LPHDGLSPAS STADDQLSKF YPPETLPSEE  180
PKSKNSLSSP VSSIDEEQIP KVKSKKSEED GDFLKDDSTE VAFTHSLKLF GKTLTVTGSA  240
SSYSDNYQPR RCEETNRRSA QLTSWNLMMG PITVTDAEHP QTGLCGEQAA HYYMQIQNEN  300
LNTVAVGSSS TSLLYRNFYG GASYPFLPPH NAVPEKNHIH SVKTEEFQDT EVQKNEPMAR  360
SNTGSGDAPA HLESQAGCTR DSDRRWNVET QSGKNESASR LEFVLKPSDE VAAPDQSKVK  420
AKCLKGFAPY KRCLPQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230503.10.0PREDICTED: uncharacterized protein LOC108205184
TrEMBLA0A166I4Z00.0A0A166I4Z0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-38MYB_related family protein