PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003445
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 399aa    MW: 43890.9 Da    PI: 5.9322
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003445genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-16218269155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  DCAR_003445 218 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 269
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-18218278IPR016177DNA-binding domain
PfamPF008473.1E-10218269IPR001471AP2/ERF domain
CDDcd000182.09E-12218277No hitNo description
Gene3DG3DSA:3.30.730.102.6E-18219277IPR001471AP2/ERF domain
SMARTSM003801.6E-31219283IPR001471AP2/ERF domain
PROSITE profilePS5103219.151219277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MYSETPNQYL HLNQQQTQLL RDHSDSTSIF SAFETNPPPK LEDFLGGDSY IHHHYTESQT  60
DATQDDSSSL THIYDNSDLK SFAANFQAFS TNSGSEVDDS ASAQFQPSQS TESRNELVVY  120
NNSGGVLSLG VNNNNNNKKN ENNEKAIVAV GDANNYTGGR EDTKRIYGIT AVEEKVRLEK  180
GVKAATYCKE MEEMKNATKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA  240
GNKDLYLGTF ATEEEAAEAY DIAAIKFRGV NAVTNFEMNR YDVEAISKSS LPVGGTSKRL  300
KLSLDAEQKS SFSSSQQQQS SSNSENSISF AAIQSASAIP YGLSFDSATP MYHQNLFHHL  360
YSGASTSETP GSLSSIATPT SVPLLSSQEF YLWPHQTY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226387.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N86e-73AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A166I6440.0A0A166I644_DAUCS; Uncharacterized protein
STRINGVIT_00s1291g00010.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-60AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]