PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003534
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-X1
Protein Properties Length: 1134aa    MW: 122308 Da    PI: 8.0456
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003534genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.3e-06389406118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H C ++CH+GpC+ C
  DCAR_003534 389 CGNHVCTAPCHPGPCGDC 406
                  ****************99 PP
2zf-NF-X120.79e-07447465119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG HkC++ CH G+C pC+
  DCAR_003534 447 CGSHKCKEVCHSGDCAPCQ 465
                  ******************7 PP
3zf-NF-X118.83.4e-06542561120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H+C++lCH G CppCp+
  DCAR_003534 542 CGQHSCESLCHSGHCPPCPE 561
                  ******************96 PP
4zf-NF-X118.93.2e-06652667116
     zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                  CG+H C ++CH+ pC+
  DCAR_003534 652 CGMHACARTCHPSPCD 667
                  ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.94E-6148217No hitNo description
PROSITE profilePS500168.636155216IPR019787Zinc finger, PHD-finger
PROSITE profilePS500898.993158214IPR001841Zinc finger, RING-type
PROSITE patternPS013590158213IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.18E-5247308No hitNo description
SMARTSM004380.29270288IPR000967Zinc finger, NF-X1-type
PfamPF014228.5272287IPR000967Zinc finger, NF-X1-type
CDDcd060086.05E-11315363No hitNo description
SMARTSM004380.0025325344IPR000967Zinc finger, NF-X1-type
PfamPF014220.0026327342IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-9379432No hitNo description
SMARTSM004381.5E-4389408IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011389406IPR000967Zinc finger, NF-X1-type
CDDcd060087.00E-14437485No hitNo description
SMARTSM004380.003447466IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-5447464IPR000967Zinc finger, NF-X1-type
PfamPF0142219504515IPR000967Zinc finger, NF-X1-type
CDDcd060085.93E-9532575No hitNo description
SMARTSM004385.2E-4542561IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-4542560IPR000967Zinc finger, NF-X1-type
CDDcd060082.41E-5589637No hitNo description
SMARTSM004380.046599617IPR000967Zinc finger, NF-X1-type
PfamPF0142235599616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0071652682IPR000967Zinc finger, NF-X1-type
PfamPF014222.0E-4652667IPR000967Zinc finger, NF-X1-type
CDDcd060082.73E-4680729No hitNo description
PfamPF0142215684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.057691712IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.2E-4936977IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MSFQVPNERR ENSNNNSNSR TRIPQNQSGR GGRREWIPRG TNNVVATTNL TPTPAAGSES  60
SVVEGMPALV RQKRNGSGEG SSMGGRGRSN GSYGDFSKRS VLNGSGNRQN LGSRGQHYGK  120
PLNQKREKAK EQSVPKDSSL PQLVQEIQEK LMKGTVECMI CYDMVKRSAP VWSCSSCYSI  180
FHLHCTKKWA RAPTSVDLSA GKDQGFNWRC PGCQSVQLTS SKEIRYVCFC RKREEPPSDL  240
YLTPHSCGEP CGKPLEKEIP GAGVTKEDLC PHLCVLQCHP GPCPPCKAFA PPRLCPCGKK  300
VITTRCSDRK SVLTCGERCD KLLDCWRHRC EKICHVGPCD TCQVVINASC FCKKKSESVL  360
CGDLTVKGEV DVVDGLFSCS LPCEKLLSCG NHVCTAPCHP GPCGDCDLLP GKIKTCYCGK  420
TGLEQERHSC LDPIPTCSEI CSKTLPCGSH KCKEVCHSGD CAPCQMLVTQ KCRCGSTSRT  480
VECYKTMGDD KFACDKPCGQ KKSCGRHRCS ERCCPLSSSK NPLPGDWDPH LCSMSCGKKL  540
RCGQHSCESL CHSGHCPPCP ETIFTDLTCA CGRTSIPPPQ PCGTPPPSCQ LPCSVAQSCG  600
HSSTHSCHFG DCPPCSVPVA KECIGGHVVL RNIPCGSKDI RCNQLCGKTR QCGMHACART  660
CHPSPCDSST VPTSGLRASC GQTCGAPRRD CRHTCSALCH PSSLCPDVRC EFRVTITCSC  720
GNISATVPCD AGGSNNGHNV DSLLELSAVQ KLPVPLQPVE ANGKRIPLGQ RKLTCDDECL  780
KMERKRALAD AFGITPNLEA LHFGESSAVS EVLSDLFRRD PKWVLAVEER CKFLVLGRGR  840
GGSSSLKVHV FCPMLKEKRD AVRLIAERWK LSISAAGWEP KRFIVVHVTP KSKAPARIFG  900
SKGTTTANMI TPSVFDPLVD MDPRLVVALF ELPSDADISA LVLRFGGECE LVWLNDKNAL  960
AVFSDPARAA TAMRRLDQGS LYYGAVVLQN GGVPGVASGA NAWGGPGAPK DGGSGLAMKG  1020
NPWKKAVVQE PDWRVSSWGD EEETVGDSTR LEASVLKRND APIPASSNRW SILDAETTPS  1080
SSTSVVQITD PGEQSKSQMV STLESGSSSS VTVEKHMDEQ TSETVEDWEK AFD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229423.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A166I8Y80.0A0A166I8Y8_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1