PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003652

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 178aa MW: 20007.4 Da PI: 8.5662

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003652	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	178.1	4e-55	2	143	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 ++C++CGnqakkdC+++RCR CC++rgf+C+thvkstWvp++ rr r + s+ ++a+a+++ +++++l++++ ss++++ e DCAR_003652 2 KRCEECGNQAKKDCTYMRCRSCCRNRGFECQTHVKSTWVPVSTRRPRPLLHPLISTCTSATAHHHPFQNPKRLRHHH-------ASSSSHHPLGYEGG 92 58******************************************9666655555555555566666666552222.......22334457788999 PP DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+evs +a frcvrvs +++ +e+aYqt+v+i GhvfkGiLydqG+++ DCAR_003652 93 DFPAEVSIPATFRCVRVSCDENAVDEYAYQTSVNIQGHVFKGILYDQGPAA 143 9*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-53	2	142	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-24	4	45	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.2E-23	94	141	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKRCEECGNQ AKKDCTYMRC RSCCRNRGFE CQTHVKSTWV PVSTRRPRPL LHPLISTCTS 60 ATAHHHPFQN PKRLRHHHAS SSSHHPLGYE GGDFPAEVSI PATFRCVRVS CDENAVDEYA 120 YQTSVNIQGH VFKGILYDQG PAAQETSTSS FQHPNLFTTT STYPFNVGTQ FFPYPKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221927.1	1e-132	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	3e-43	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A166ICS8	1e-130	A0A166ICS8_DAUCS; Uncharacterized protein
STRING	XP_009602229.1	3e-59	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-44	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	DCAR_003652

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]