PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003670
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 72aa    MW: 8145.17 Da    PI: 10.0657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003670genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.4e-10346344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT++  + + +a +++ ++   +W  +a+ +g g+t+++++ ++
      DCAR_003670  3 SWTAQQNKAFEKALAKYDKDtpdRWYNVAKAVG-GKTAEEVRRHY 46
                     6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.122154IPR017884SANT domain
SMARTSM007178.1E-6152IPR001005SANT/Myb domain
PfamPF002495.5E-8346IPR001005SANT/Myb domain
CDDcd001671.94E-7346No hitNo description
SuperFamilySSF466892.65E-13358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-6355IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MASWTAQQNK AFEKALAKYD KDTPDRWYNV AKAVGGKTAE EVRRHYEILV TDVRRIENGN  60
VPFPKYRTTG G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-324711178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220407.14e-47PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB83e-35RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A166IDH41e-45A0A166IDH4_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_62.1573e-39(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-37RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]